Structure
What are the elements that make up this word's structure?
It's quite possible this word also cannot be analyzed or perhaps we can go with this hypothesis:
foss + il
Other words that end with pencil and civil. Could this be a suffix? You can look up suffixes in Etymonline by putting a dash prior to the spelling. (You can do this with prefixes as well by inserting a dash afterwards.) The search takes me to an entry for <-ile> which it says can also be
There's a history with affixes, just like there's a history with words. The suffix <-ile> comes from either the French <-il> or the Latin <-ilis>. If the fossil, that will be reflected in the entry. Just because it looks like a suffix doesn't mean it always is. Looks can be deceiving.
The Etymonline entry for fossil arrived in English in the 1610s. This is during the Modern English period. Here is its journey:
E. fossil
F. fossile
L. fossilis
L. fossus, past participle of fodere
I occasionally arrange a word's journey in a column like this so my students can note how the word's spelling has changed through time. The verb fodio, "dig out," has four principal parts: fodio, fodere, fodi, and fossus. The principal parts of a Latin verb can be found by going to Lat-Dict and using the search engine there. The second and fourth principal parts are used to find the English base. As Etymonline tells us, fossus, is the fourth principal part, or past participle, of fodio. Remove the suffix <-us> to obtain
foss + il
The form fossilis was an adjective form. We see the ancestor of the suffix <-il> in the Latin <-ilis>.